dna databank of japan (Databank Inc)

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Databank Inc dna databank of japan
Dna Databank Of Japan, supplied by Databank Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/dna+databank+of+japan/dna+databank+of+japan/pm40632136-5-16-18
Average 90 stars, based on 1 article reviews

dna databank of japan - by Bioz Stars, 2026-09

90/100 stars

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Sequencing:

Article Title: Bile-Liver phenotype: Exploring the Microbiota Landscape in Bile and Intratumor of Cholangiocarcinoma
Article Snippet: .. Abbreviations: CCA, Cholangiocarcinoma; DDBJ, DNA DataBank of Japan; SRA, NCBI Sequence Read Archive; ROC, Receiver operating characteristic; NMDS, Non-Metric Dimensional Scaling; RF, Random forest; TP, True positive; FP, False positive; PERMANOVA, Permutational multivariate analysis of variance; LEfSe, Linear Discriminant Analysis Effect Size; ERCP, endoscopic retrograde cholangiopancreatography; PTCD, Percutaneous transhepatic cholangial drainage; BBD, Biliary benign disease; ENA, European Nucleotide Archive; GSA, Genome Sequence Archive; PCA, Principal Coordinate Analysis; AUC, Area Under the Curve; NET, neutrophil extracellular trap; TN, True negative; FN, False negative. ..

Article Title: Bile-Liver phenotype: Exploring the microbiota landscape in bile and intratumor of cholangiocarcinoma
Article Snippet: .. We systematically searched four major genomic databases—the DNA DataBank of Japan (DDBJ, https://www.ddbj.nig.ac.jp/ ), European Nucleotide Archive (ENA, http://www.ebi.ac.uk/ena ), NCBI Sequence Read Archive (SRA, http://www.ncbi.nlm.nih.gov/sra ), and Genome Sequence Archive (GSA, https://ngdc.cncb.ac.cn/gsa/ )—using the search terms "cholangiocarcinoma," "bile duct cancer," "gallbladder cancer," "16S rRNA," and "metagenome," filtered by "Bioproject." ..

Article Title: The complete mitochondrial genome of Pleurocorallium inutile (Octocorallia: Scleralcyonacea: Coralliidae)
Article Snippet: .. The raw sequencing reads were deposited in the DNA Databank of Japan under Accession Number DRA020369. ..

other:

Article Title: Fodinibius alkaliphilus sp. nov., a moderately halophilic and alkaliphilic bacterium isolated from an inland saltern in central Portugal and reclassification of Aliifodinibius salipaludis as Fodinibius salipaludis sp. nov.
Article Snippet: Abbreviations: ANI, average nucleotide identity; BLAST, Basic Local Alignment Search Tool; COG, Clusters of Orthologous Genes; DDBJ, DNA Databank of Japan; EMBL, European Molecular Biology Lab; ENA, European Nucleotide Archive; GO, Gene Ontology; KCTC, Korean Collection for Type Cultures; KEGG, Kyoto Encyclopedia of Genes and Genomes; MA, marine agar 2216; MB, marine broth; MCCC, Marine Culture Collection of China; MCCC, Marine Culture Collection of China; ML, maximum- likelihood; NCBI, National Center for Biotechnology Information; T, type strain.

Article Title: Alistipes Bacteremia in Older Patients with Digestive and Cancer Comorbidities, Japan, 2016-2023.
Article Snippet: DOI: https://doi.org/10.3201/eid3104.241284 A is an anaerobic bacterium rarely detected in clinical samples.. Initially described as a bileresistant, pigment-producing, gram-negative bacillus (1,2), Alistipes was classified as a new genus in 2003 (3).. The genus contains 11 species, including A. finegoldii (3), A. putredinis (3), and A. onderdonkii (4), which have been isolated from the appendix, feces, intra-abdominal fluid, and blood (3,5–7).

Article Title: Maternal progesterone and adipose mPRε in pregnancy regulate the embryonic nutritional state.
Article Snippet: 280gb5mzf and the DNA DataBank of Japan: E-GEAD-852, E-GEAD853, E-GEAD-854, and E-GEAD-894. d This paper does not report original code. d Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.

RNA sequencing:

Article Title: Impact of ATF6 deletion on the embryonic brain development
Article Snippet: .. Data and code availability • The raw data of RNA-sequencing have been deposited at DNA DataBank of Japan (DDBJ) as DRA accession number: PRJDB18856 and are publicly available as of the date of publication. .. • Original western blot and microscopy images have been deposited at Mendeley Data and are publicly available at https://doi.org/10.17632/ 5j2pgxgg73.1 as of the date of publication.

Mass Spectrometry:

Article Title: Alistipes Bacteremia in Older Patients with Digestive and Cancer Comorbidities, Japan, 2016–2023
Article Snippet: .. Another strain (KML 24011) could not be identified using MALDI-TOF mass spectrometry and exhibited 99.7% similarity to A. ihumii AP11 T . Reanalysis of the 3 A. finegoldii strains isolated in previous reports yielded the following results: strain 3302398 showed 100% similarity to Alistipes dispar 5CPEGH6 T , and strain 4401054 showed 99.0%–100% similarity to A. onderdonkii subsp. onderdonkii DSM 19147 T . Strain Granada showed 97.6% similarity with A. finegoldii DSM 17242 T . The 16S rRNA gene sequences and draft genome data have been deposited in GenBank via the DNA DataBank of Japan (Appendix Tables 2, 4). ..

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